MEDIQA 2019 QA (lm-eval)

lm-eval's generation wrap of MEDIQA 2019 Task 3: write an English answer to a consumer health question and score overlap against the first listed gold answer.

Also known as: mediqa_qa2019_perplexity, MEDIQA-QA 2019 (lm-eval)

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Categorydomain
Subcategoryconsumer health question answering (generation overlap metrics)
Page statusunknown
Metricbleu, rouge1, rouge2, rougeL, bleurt, bert_score (no designated headline)
Directionhigher_is_better
Dataset size150
Dataset licenceCC-BY-4.0 on the authors' GitHub README; Hugging Face bigbio/mediqa_qa lists licence as unknown
PublisherU.S. National Library of Medicine (LHC/NLM) and IBM Research; lm-eval task by EleutherAI

What it measures

This id is EleutherAI lm-evaluation-harness task mediqa_qa2019, not the 2019 ranking shared task as originally scored, and not HELM medi_qa. MEDIQA 2019 Task 3 gave a consumer health question plus CHiQA candidate answers and asked systems to filter and re-rank them. lm-eval instead takes the question text and asks the model to generate a free-form answer. Inputs and outputs are English text. The original shared task also had medical NLI and recognizing-question-entailment tracks; those are not this id.

Task format

generate_until generation, stopping at a blank line. The YAML description tells the model to answer a patient question as a doctor would. Gold is QUESTION.AnswerList[0].Answer.AnswerText from the Hugging Face source schema, which is XML file order, not the expert's ReferenceRank=1 answer. A separate task mediqa_qa2019_perplexity scores loglikelihood of that gold string.

Models reporting this benchmark

No model card in ModelSpec reports this benchmark yet.

Data

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